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- 1Turtles in Space (1) The FugitoidNovember 8, 2003
- 2Turtles in Space (2) The Trouble with TriceratonsNovember 15, 2003
- 3Turtles in Space (3) The Big HouseNovember 22, 2003
- 4Turtles in Space (4) The ArenaNovember 29, 2003
- 5Turtles in Space (5) Triceraton WarsDecember 6, 2003
- 6Secret Origins - Part OneJanuary 17, 2004
- 7Secret Origins - Part TwoJanuary 24, 2004
- 8Secret Origins - Part ThreeJanuary 31, 2004
- 9The Ultimate NinjaFebruary 7, 2004
- 10ReflectionsFebruary 14, 2004
- 11Modern Love - The Return of NanoFebruary 21, 2004
- 12What a CrocFebruary 28, 2004
- 13Return to the UndergroundMarch 6, 2004
- 14City at War - Part OneMarch 13, 2004
- 15City at War - Part TwoMarch 20, 2004
- 16City at War - Part ThreeMarch 27, 2004
- 17JunklantisApril 3, 2004
- 18The Golden PuckApril 10, 2004
- 19Rogue in the House - Part OneApril 17, 2004
- 20Rogue in the House - Part TwoApril 24, 2004
- 21April's ArtifactMay 1, 2004
- 22Return of the Justice ForceMay 8, 2004
- 23Big Brawl - Part OneMay 15, 2004
- 24Big Brawl - Part TwoSeptember 18, 2004
- 25Big Brawl - Part ThreeSeptember 25, 2004
- 26Big Brawl - Part FourOctober 2, 2004